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Intron Name: Anas_platyrhynchos_platyrhynchos_13_17498370_17498415_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17498370 - 17498415

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAA|GCACTTCTG

5'SS Class:

major

3'SS Sequence:

GGGGGGGGCAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTCGAG

U12 Branch Point Sequence:

GCTGCTTCGAGT

Flanking Amino Acid:

TEAEGRHWHMKYIMKDGRPY

Intron Amino Acid Position:

272

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.9

0.31

1.3

59.6

44.8

Major BPS

-0.3

1.7

47.5

Major PPT

37.5

-0.7

1.6

21.9

36.6

Minor 5ss

28.2

-2.5

4.1

40.8

39.6

Minor BPS

-0.3

1.9

59.32

44.6

Associated Gene:

Gene:

PRICKLE2

Ensembl Gene ID:

ENSAPLG00000003962

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039430

17483652 - 17511629

27978

ENSAPLT00000004072

17482757 - 17511629

28873