Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17498505_17500750_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17498505 - 17500750

Intron Length:

2246

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTACGTGCG

5'SS Class:

major

3'SS Sequence:

GGTTCCCCCCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGGGAC

U12 Branch Point Sequence:

CAGGGCTGACTT

Flanking Amino Acid:

EYCDTCAQHIGIDQGQMTYD

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.1

61.2

43.7

Major BPS

48.6

-0

1.5

48.8

46.3

Major PPT

57.5

0.17

53.5

Minor 5ss

32.4

-2

3.3

41.7

44.8

Minor BPS

39.3

-0.7

48.97

44.8

Associated Gene:

Gene:

PRICKLE2

Ensembl Gene ID:

ENSAPLG00000003962

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039430

17483652 - 17511629

27978

ENSAPLT00000004072

17482757 - 17511629

28873