About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1750322_1751469_R

Intron Information:

Intron Rank:
44
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1750322 - 1751469
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
AAACTATAATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TATGTCTAAACT
Flanking Amino Acid:
HEKRRRPSSRSPKYLFAAYR
Intron Amino Acid Position:
1824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
56.2
0.14
1.1
53.5
44.2
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
63.3
0.49
1.8
80.35
41.7

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604