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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17532329_17533338_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17532329 - 17533338
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGTAAG
5'SS Class:
major
3'SS Sequence:
GCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACAAA
U12 Branch Point Sequence:
CAGGCAGTAACA
Flanking Amino Acid:
DELMAAVRQHDMAPYYEALC
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
65.5
41.9
Major BPS
49.3
-0
1.3
57.4
35.7
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
29
-2.4
2.8
33.3
41.9
Minor BPS
43.7
-0.4
2.3
53.17
45

Associated Gene:

Gene:
PSMD6
Ensembl Gene ID:
ENSAPLG00000003464
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003540
17532184 - 17538629
6446