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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17535444_17535536_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17535444 - 17535536
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAGTATTTAAAT
Flanking Amino Acid:
ALDRPDLREKVIKGAEILEV
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.7
0.76
0.8
80.6
31.5
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
61.6
0.44
1.6
75.54
40.7

Associated Gene:

Gene:
PSMD6
Ensembl Gene ID:
ENSAPLG00000003464
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003540
17532184 - 17538629
6446