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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17538384_17538532_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17538384 - 17538532
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCACAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTCTCACAATT
Flanking Amino Acid:
DKVNEIVETNRPDSKNWQYQ
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.2
29.7
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
69.8
0.45
0.9
66.4
39.2
Minor 5ss
40.8
-1
3.1
57.9
46.7
Minor BPS
54.4
0.22
1.8
78.58
37.5

Associated Gene:

Gene:
PSMD6
Ensembl Gene ID:
ENSAPLG00000003464
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003540
17532184 - 17538629
6446