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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17549022_17549299_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17549022 - 17549299
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCC
Flanking Amino Acid:
VEKHLNSQMWKKIPPASSNT
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.3
0.75
0.7
78.4
29.1
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
64.1
0.42
1.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003397
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003466
17548037 - 17601518
53482