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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17549422_17550611_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17549422 - 17550611
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
TCTGTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
ATGCCAATAAAA
Flanking Amino Acid:
YSGHHPQPAAFCTFGSRQIG
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
64.8
41.7
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
59.9
0.33
2.3
76.2
39.3
Minor BPS
46.3
-0.2
1.9
59.47
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003397
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003466
17548037 - 17601518
53482