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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17554023_17554565_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17554023 - 17554565
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCATAAATAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAAAT
Flanking Amino Acid:
VQHSKVPHDKIMTPSVKVEK
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
100
1.24
0.5
100
0
Major PPT
58.5
0.19
1
52.7
40.1
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
70
0.71
1.7
90.16
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003397
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003466
17548037 - 17601518
53482