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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17554822_17579306_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17554822 - 17579306
Intron Length:
24485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
GGGAGTTTAAAG
Flanking Amino Acid:
VKPQAFQSHYERRHSSSSKP
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
43.9
-0.6
1.9
42.78
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003397
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003466
17548037 - 17601518
53482