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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17579412_17600789_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17579412 - 17600789
Intron Length:
21378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGCCAT
U12 Branch Point Sequence:
GATATGCCATTT
Flanking Amino Acid:
NREAMRLCREDMPIFGLCPA
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
53.4
0.08
1.4
64.2
43
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
32.6
-1.2
2.2
47.32
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003397
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003466
17548037 - 17601518
53482