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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17624779_17625024_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17624779 - 17625024
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
PLAAMGAVTDDEVIRKRLLI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
62.7
43.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.8
0.6
84.9
22.8
Minor 5ss
35.5
-1.6
3.2
49.8
46
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
THOC7
Ensembl Gene ID:
ENSAPLG00000003317
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003394
17624430 - 17632721
8292