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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17625143_17625936_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17625143 - 17625936
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATTTGTT
5'SS Class:
major
3'SS Sequence:
TGTCTGCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAGGAATGAATA
Flanking Amino Acid:
KWCNSGSQEEGYSQYQRMLS
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
70.7
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
80.8
0.69
0.9
77.2
37.1
Minor 5ss
44.3
-0.6
3.2
58
46.6
Minor BPS
43.3
-0.5
1.9
51.76
39.7

Associated Gene:

Gene:
THOC7
Ensembl Gene ID:
ENSAPLG00000003317
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003394
17624430 - 17632721
8292