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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17631341_17631463_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17631341 - 17631463
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATACTTTATCA
Flanking Amino Acid:
SHIKENVEDKLELRRKQFHV
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.2
0.75
0.9
74.6
39.8
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
63.9
0.43
1.6
73.34
38.3

Associated Gene:

Gene:
THOC7
Ensembl Gene ID:
ENSAPLG00000003317
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003394
17624430 - 17632721
8292