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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17662898_17663724_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17662898 - 17663724
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AAATTCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTCCATTTAAAA
Flanking Amino Acid:
LQTQFLSFIQGQENKPKYQE
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
65.2
0.34
0.9
58.9
37.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
49.7
-0
1.6
58.75
40.8

Associated Gene:

Gene:
SNTN
Ensembl Gene ID:
ENSAPLG00000003311
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003370
17662739 - 17665241
2503