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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17663865_17664496_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17663865 - 17664496
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATAG
Flanking Amino Acid:
PIAKQLASIKALEKGSDLEK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.1
0.7
0.7
74.7
30.6
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
51.8
-0
1.9
65.3
42.3

Associated Gene:

Gene:
SNTN
Ensembl Gene ID:
ENSAPLG00000003311
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003370
17662739 - 17665241
2503