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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17664532_17665035_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17664532 - 17665035
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
CTCTCCCTACCA
Flanking Amino Acid:
SPPAAAGMSKRMPIAKQLAS
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
33.5
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
73.7
0.53
0.9
66.4
34.4
Minor 5ss
33.5
-1.9
3.2
44.3
43.6
Minor BPS
53.1
0.09
2
67.55
44.9

Associated Gene:

Gene:
SNTN
Ensembl Gene ID:
ENSAPLG00000003311
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003370
17662739 - 17665241
2503