Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17673307_17680395_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17673307 - 17680395

Intron Length:

7089

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

ATTTGTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTATAAT

U12 Branch Point Sequence:

ATGCTCCCAACT

Flanking Amino Acid:

YRENNRGPLIDFIVTVVFSF

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

70.9

39.3

Major BPS

70.1

0.5

1.3

72.3

40.4

Major PPT

80.8

0.69

0.8

78.4

35.6

Minor 5ss

38.9

-1.3

3.4

55.1

43.4

Minor BPS

48.4

-0

1.9

68.87

41.6

Associated Gene:

Gene:

SYNPR

Ensembl Gene ID:

ENSAPLG00000003065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046746

17670690 - 17706915

36226

ENSAPLT00000033508

17670690 - 17760949

90260

ENSAPLT00000003121

17672054 - 17695619

23566