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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17680595_17693510_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17680595 - 17693510
Intron Length:
12916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
GAATATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
TGTGCTTCACCT
Flanking Amino Acid:
NIDIAFAYPFRLHQVNFDAP
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
72.4
0.5
1
62.2
47.7
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
50
0.08
1.9
72.55
44.5

Associated Gene:

Gene:
SYNPR
Ensembl Gene ID:
ENSAPLG00000003065
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003121
17672054 - 17695619
23566
ENSAPLT00000046746
17670690 - 17706915
36226
ENSAPLT00000033508
17670690 - 17760949
90260