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Intron Name: Anas_platyrhynchos_platyrhynchos_13_1769649_1770830_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1769649 - 1770830

Intron Length:

1182

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

ATTTTTTGAACA

Flanking Amino Acid:

KLCPHRVACKRLVAMNMPLN

Intron Amino Acid Position:

1553

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

87.9

29.3

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

84.3

0.77

0.7

79.4

26.1

Minor 5ss

44.7

-0.6

3.2

66.4

45.1

Minor BPS

0.63

1.3

78.17

31.7

Associated Gene:

Gene:

CACNA1D

Ensembl Gene ID:

ENSAPLG00000013574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014339

1737373 - 1928976

191604