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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_176989_178661_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
176989 - 178661
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
ATTGTGTGAACT
Flanking Amino Acid:
FTVMCRKKQQENIYSHLDEE
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
73.1
0.52
0.9
71.5
33.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
49.2
0.02
2.2
74.58
42.3

Associated Gene:

Gene:
IL17RD
Ensembl Gene ID:
ENSAPLG00000002958
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003029
136259 - 183602
47344