Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1772385_1774138_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1772385 - 1774138

Intron Length:

1754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TGACCTTATGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TAATACTTAATT

Flanking Amino Acid:

TFPQAVLLLFRCATGEAWQE

Intron Amino Acid Position:

1424

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

88.4

18.8

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

60.1

0.23

1.1

60.6

39.4

Minor 5ss

29.6

-2.3

2.6

32.7

42.2

Minor BPS

73.1

0.8

1.4

83.55

36.8

Associated Gene:

Gene:

CACNA1D

Ensembl Gene ID:

ENSAPLG00000013574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014339

1737373 - 1928976

191604