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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1774231_1775455_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1774231 - 1775455
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
AAAGTCAAAATC
Flanking Amino Acid:
FFIYAVIGMQVFGKVAMRDN
Intron Amino Acid Position:
1394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
85.3
0.79
0.7
81.6
30.4
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
42.1
-0.6
1.8
47.07
36

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604