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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1775522_1776279_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1775522 - 1776279
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCAAA
5'SS Class:
major
3'SS Sequence:
GTCCCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAATTATTAAAG
Flanking Amino Acid:
LLWTFIKSFQALPYVALLIA
Intron Amino Acid Position:
1372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.3
36.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.3
0.5
0.8
64.8
36.4
Minor 5ss
35.1
-1.7
2.7
40.3
45.5
Minor BPS
49.7
-0.1
1.7
54.59
39.6

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604