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Intron Name: Anas_platyrhynchos_platyrhynchos_13_1776399_1786981_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1776399 - 1786981

Intron Length:

10583

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAT|GCACTAAAA

5'SS Class:

weak_major

3'SS Sequence:

CAGAACTCCGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCAGAA

U12 Branch Point Sequence:

TTCTCCATGATA

Flanking Amino Acid:

DVSIPHSNCSYSARISITFF

Intron Amino Acid Position:

1332

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.2

0.12

1.4

53.8

38.9

Major BPS

64.9

0.37

37.5

Major PPT

-0

1.1

45.3

Minor 5ss

23.9

-3

3.9

35.2

41.4

Minor BPS

64.9

0.46

1.6

75.23

36.3

Associated Gene:

Gene:

CACNA1D

Ensembl Gene ID:

ENSAPLG00000013574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014339

1737373 - 1928976

191604