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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17795387_17796572_F

Intron Information:

Intron Rank:
127485
Intron Class:
major
Intron Phase:
Intron Coordinates:
17795387 - 17796572
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTGGACTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTCCTGTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.8
0.51
1
65.3
40.8
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
67.5
0.63
1.8
86.31
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018755
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043303
17793907 - 17797607
3701