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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17891808_17920511_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17891808 - 17920511
Intron Length:
28704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTAACCTTGATT
Flanking Amino Acid:
EHQLLYNACQLDNPDEQAAQ
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
77.9
31.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.1
0.77
0.9
79.9
37.7
Minor 5ss
30.5
-2.2
3.5
41.8
45.1
Minor BPS
74.4
0.85
1.2
84.83
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040013
17854056 - 18049169
195114
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114