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Intron Name: Anas_platyrhynchos_platyrhynchos_13_1790105_1793168_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1790105 - 1793168

Intron Length:

3064

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CATTTTACATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TGTCATTTTACA

Flanking Amino Acid:

VLKLIAFKPKIFVKKKERWL

Intron Amino Acid Position:

1285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.2

1.16

0.6

9.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

73.1

0.52

71.9

37.6

Minor 5ss

46.1

-0.4

2.8

66.9

44.4

Minor BPS

51.5

0.04

1.8

66.82

38.8

Associated Gene:

Gene:

CACNA1D

Ensembl Gene ID:

ENSAPLG00000013574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014339

1737373 - 1928976

191604