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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17920593_17924489_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17920593 - 17924489
Intron Length:
3897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAATC
Flanking Amino Acid:
RLQMAEQIAKERKFPKFVSK
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
64.5
0.33
1.1
61.8
42.7
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
64
0.42
1.3
71.32
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114
ENSAPLT00000040013
17854056 - 18049169
195114