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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17926714_17942211_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17926714 - 17942211
Intron Length:
15498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
TGCTGCTGGAGC
Flanking Amino Acid:
QTDQAEASKPTWGTQGDFTT
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.3
76.2
39.9
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
85.8
0.81
0.8
80.4
31.6
Minor 5ss
40.2
-1.1
3
53
37.2
Minor BPS
44
-0.4
2.2
54.92
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040013
17854056 - 18049169
195114
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114