Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17942324_17946711_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17942324 - 17946711

Intron Length:

4388

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TTGACGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CAATTTTTAATG

Flanking Amino Acid:

LALEDKELGRVVLHPTPNSP

Intron Amino Acid Position:

487

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

69.6

42.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.3

0.52

65.8

40.7

Minor 5ss

31.2

-2.2

3.1

31.3

42.6

Minor BPS

60.1

0.18

1.3

56.34

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002031

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040013

17854056 - 18049169

195114

ENSAPLT00000023780

17854056 - 18049169

195114

ENSAPLT00000021873

17854056 - 18049169

195114

ENSAPLT00000002342

17854056 - 18049169

195114