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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17958468_17968937_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17958468 - 17968937
Intron Length:
10470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TATAAATGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TATAAATGAACA
Flanking Amino Acid:
PQLDAPISQFYADRAQKHGM
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
58
0.18
1.1
51.7
45.5
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
48.6
-0.1
1.9
65.46
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040013
17854056 - 18049169
195114
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114