About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17969075_17974345_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17969075 - 17974345
Intron Length:
5271

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATTTCTAAACA
Flanking Amino Acid:
HRLNDSYSCLGWFSPGQVFV
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
85.5
30.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74.4
0.55
1
70.8
38.6
Minor 5ss
29.1
-2.4
3.8
39.2
40.5
Minor BPS
71.2
0.66
1.6
80.05
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114
ENSAPLT00000040013
17854056 - 18049169
195114