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Intron Name: Anas_platyrhynchos_platyrhynchos_13_1797294_1797574_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1797294 - 1797574

Intron Length:

281

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGAATT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

ATTTCACTAATG

Flanking Amino Acid:

DEAKQNPEECRGIYIVYKDG

Intron Amino Acid Position:

1078

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

32.9

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

85.4

0.8

0.7

79.9

25.7

Minor 5ss

34.4

-1.8

3.2

50.4

45.6

Minor BPS

55.6

0.04

68.1

39.2

Associated Gene:

Gene:

CACNA1D

Ensembl Gene ID:

ENSAPLG00000013574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014339

1737373 - 1928976

191604