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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17985876_17986513_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17985876 - 17986513
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTGTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
GATGCCACAACA
Flanking Amino Acid:
LKATLSLLERVLMKDIVTPV
Intron Amino Acid Position:
827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78
38.6
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
68.1
0.41
1.2
67.1
43
Minor 5ss
42.5
-0.8
2.9
49.4
46.6
Minor BPS
49
-0
1.9
63.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114
ENSAPLT00000040013
17854056 - 18049169
195114