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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17986638_17989033_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17986638 - 17989033
Intron Length:
2396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCCTCTTTTATA
Flanking Amino Acid:
TRLSEYAKIEGKKREMYEHP
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
83.6
0.76
0.7
79.3
26.3
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
59.8
0.3
1.6
66.19
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021873
17854056 - 18049169
195114