About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17986638_17997828_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17986638 - 17997828
Intron Length:
11191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTACTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCCTTTTAACT
Flanking Amino Acid:
TRLSEYAKIEENVGRLVTPA
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80
0.67
0.9
73.4
35.9
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
68.6
0.66
1.2
77.46
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040013
17854056 - 18049169
195114
ENSAPLT00000023780
17854056 - 18049169
195114