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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17989980_17997828_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17989980 - 17997828
Intron Length:
7849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACTAT
5'SS Class:
major
3'SS Sequence:
TCTTGTACTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCCTTTTAACT
Flanking Amino Acid:
AKIEENQKDAENVGRLVTPA
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.4
33.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80
0.67
0.9
73.4
35.9
Minor 5ss
39.4
-1.2
3.2
55
49.2
Minor BPS
68.6
0.66
1.2
77.46
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114