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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17997936_18003451_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17997936 - 18003451
Intron Length:
5516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
ACCAACCCTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
CTTTTTCTACCA
Flanking Amino Acid:
LQQNEEHHAEAFAWWSDLMV
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
52.5
0.06
1.1
49.6
33.4
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
49.5
-0
1.9
66.77
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114
ENSAPLT00000040013
17854056 - 18049169
195114