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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18003609_18004661_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18003609 - 18004661
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
TTATCTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
QLLNDFLRSDYNLCNGKFHK
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
76.8
37.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.3
0.64
0.9
71
39.4
Minor 5ss
52.4
0.08
2.5
78.4
35.5
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114
ENSAPLT00000040013
17854056 - 18049169
195114