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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18011314_18014434_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18011314 - 18014434
Intron Length:
3121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
TCTGCCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
CCGCTTATGACT
Flanking Amino Acid:
PSWMAAIYDSDNGSGTSEDL
Intron Amino Acid Position:
1058

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1
73.3
37.3
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
69.4
0.44
1
61.9
39.9
Minor 5ss
43.6
-0.7
2.8
56
42.5
Minor BPS
45.7
-0.2
1.6
56.09
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002031
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023780
17854056 - 18049169
195114
ENSAPLT00000021873
17854056 - 18049169
195114
ENSAPLT00000002342
17854056 - 18049169
195114