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Intron Name: Anas_platyrhynchos_platyrhynchos_13_1803075_1806257_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1803075 - 1806257

Intron Length:

3183

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGCCCA

5'SS Class:

major

3'SS Sequence:

GTTTACCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATAAT

U12 Branch Point Sequence:

TTTTGTTTACCT

Flanking Amino Acid:

PIRSHSFRNNILGYADYVFT

Intron Amino Acid Position:

940

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.1

64.5

41.4

Major BPS

67.7

0.44

1.1

67.9

34.4

Major PPT

80.1

0.68

0.9

70.3

Minor 5ss

40.6

-1.1

53.6

43.3

Minor BPS

64.1

0.52

87.23

Associated Gene:

Gene:

CACNA1D

Ensembl Gene ID:

ENSAPLG00000013574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014339

1737373 - 1928976

191604