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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18061376_18061502_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18061376 - 18061502
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
GCGCTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGGTCCTAACCT
Flanking Amino Acid:
KNFTCEVCGKVFNAHYNLTR
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
68
0.41
0.9
61.5
35
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
52.8
0.17
2
70.85
45.9

Associated Gene:

Gene:
FEZF2
Ensembl Gene ID:
ENSAPLG00000020979
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034909
18060588 - 18062585
1998