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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1806388_1808178_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1806388 - 1808178
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAATACC
5'SS Class:
major
3'SS Sequence:
ATTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTATATTT
Flanking Amino Acid:
SAFFIFSSTNPIRVGCHRLI
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.1
0.26
1.4
63.4
41.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.8
0.83
0.7
81.7
29.5
Minor 5ss
38.2
-1.3
2.8
51.3
38.3
Minor BPS
51.2
0.12
1.8
74.4
37

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604