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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1809595_1810210_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1809595 - 1810210
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTTATT
5'SS Class:
major
3'SS Sequence:
TTCTTTGCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TCTCCTTGTACA
Flanking Amino Acid:
SDQKKPKDSKVTIAEYGEGE
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
81.5
31.4
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
76.3
0.59
0.8
72.4
32.4
Minor 5ss
42.4
-0.8
2.8
59.8
44.7
Minor BPS
50.8
0.02
1.8
65.45
40.6

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604