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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18105630_18108537_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18105630 - 18108537
Intron Length:
2908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
TGTGGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTTCTGAGGA
Flanking Amino Acid:
TRDGPTIVHDEYGAVSAGTL
Intron Amino Acid Position:
1329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
68.1
42.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
80.5
0.69
0.9
76.9
42.1
Minor 5ss
47.5
-0.2
2.8
63.9
41.5
Minor BPS
52.5
0.08
2
71.77
40.4

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775