About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1811109_1812204_R

Intron Information:

Intron Rank:
16
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
1811109 - 1812204
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TGATTTGAAACAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATGTCCTTAAAA
Flanking Amino Acid:
YFIILFICGNYILLNVFLAI
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
63.3
0.3
1.1
58.9
45.3
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
76.7
0.83
1.3
79.38
36.4

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604