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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18115470_18115802_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18115470 - 18115802
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGTTGTTTATCT
Flanking Amino Acid:
TQRNYLVQTEEQYIFIHDAL
Intron Amino Acid Position:
1084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
73.8
0.54
1
66.6
44.3
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
58.6
0.35
2
80.3
41.9

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775