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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18115939_18116930_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18115939 - 18116930
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTCTCTTATGT
Flanking Amino Acid:
PDMGPVVVHCSAGVGRTGTY
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
65.1
41.6
Major BPS
73.9
0.59
1
81
30.2
Major PPT
74.3
0.55
0.8
70.3
35.7
Minor 5ss
43.4
-0.7
2.8
56.2
48
Minor BPS
58.9
0.36
1.9
80.81
41.1

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775