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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18117104_18117497_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18117104 - 18117497
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TAATCTTTATTT
Flanking Amino Acid:
FTVRNTKMKKGQKGNPKGRQ
Intron Amino Acid Position:
981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
72.9
0.52
1
66.5
39.2
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
65.4
0.56
1.5
77.84
38.8

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775